Webservices at the Teaching and Research Unit Bioinformatics

These webservices are implemented in context of the HOBIT project.

• ProThesaurus (Protein Thesaurus): Biological Name and Mark-up Service for Protein Names and Identifiers


• ProMLResolver: (performs queries in proml and replaces query by resulting data)


• ProSAS : Database for analyzing alternative splicing events in several mamalian genomes in the context of protein structure and protein function.


• AutoPSI: Database combining AutoSCOP and Vorolign predictions for protein sequences and structures

XML Schemas used

• ProML
• Biotypes

Tools

• a simple document style webservice client
• a library for asychronous webservices

Additional software

• Check correct Referencing of Chemical Shift Data
• Retrieve and Analyze Chemical Shift Data
• Succinct Representation of RMQ Information :
  C++ source (.tgz) data structure for constant-time range minimum queries that uses only 2n+o(n) bits of additional space.
• Linear Frequent String Miner and Emerging Substring Miner:
  C++ source (.tgz) for an algorithm to mine frequent or emerging substrings from 2 databases of strings. Some linear-time components are replaced by theoretically slower methods that work better in practice.